bindingdb_by_pdb
shallowio.github.pipeworx-io/bindingdb · Verify this server
Measured binding affinities for the ligands associated with a PDB structure entry, linking a solved co-crystal to the potency numbers published for that target. AUTHORITATIVE for "what is the measured affinity of the ligand in this PDB structure". Takes a single 4-character PDB ID (e.g. 3EML).
1 trials · measured 1 day ago
bindingdb_by_pdb scores 100.0/100 on Vouch's measured behaviour index, from 1 real invocation trials against io.github.pipeworx-io/bindingdb, measured 6 Oct 2026 under methodology v0.2.0. Every measured component scored 100.
Component breakdown
| Component | Weight | Value |
|---|---|---|
| Reliability | 35% | not applicable |
| Schema integrity | 25% | 100.0 |
| Failure behaviour | 15% | not applicable |
| Latency | 15% | not applicable |
| Concurrency | 10% | not applicable |
Tool details
- Transport
- remote
- Credential class
- self-provisionable
- Input schema
- not declared
- Output schema
- not declared
- Side-effect classification
- unclassified
Score history
| Day | Score | Tier | Methodology |
|---|---|---|---|
| 2026-10-06 | 100.0 | shallow | v0.2.0 |
Probe evidence
| Probe | Outcomes |
|---|---|
| schema_integrity | pass: 1 |
Raw request/response logs are not archived yet — the outcome counts above are drawn directly from every recorded trial.
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[](https://vouch.tools/tools/f48249a9-8cad-4583-b98c-5ecb225b7ca8)