biomodels_search
shallowio.github.pipeworx-io/biomodels · Verify this server
Search BioModels for published, executable mathematical models of biological systems — metabolic pathways, signalling cascades, cell-cycle and circadian oscillators, whole-cell metabolic reconstructions, infectious-disease models. AUTHORITATIVE for "is there a published computational model of X I can actually run", which web search answers with papers rather than with loadable SBML. Returns model id, name, format, submitter and date, plus facet counts (curation status, modelling approach, and cross-referenced taxonomy/GO/UniProt/ChEBI terms) that show how the matching models break down. Search accepts pathway names, diseases, organisms, genes, proteins and author names.
1 trials · measured 1 day ago
biomodels_search scores 100.0/100 on Vouch's measured behaviour index, from 1 real invocation trials against io.github.pipeworx-io/biomodels, measured 6 Oct 2026 under methodology v0.2.0. Every measured component scored 100.
Component breakdown
| Component | Weight | Value |
|---|---|---|
| Reliability | 35% | not applicable |
| Schema integrity | 25% | 100.0 |
| Failure behaviour | 15% | not applicable |
| Latency | 15% | not applicable |
| Concurrency | 10% | not applicable |
Tool details
- Transport
- remote
- Credential class
- self-provisionable
- Input schema
- not declared
- Output schema
- not declared
- Side-effect classification
- unclassified
Score history
| Day | Score | Tier | Methodology |
|---|---|---|---|
| 2026-10-06 | 100.0 | shallow | v0.2.0 |
Probe evidence
| Probe | Outcomes |
|---|---|
| schema_integrity | pass: 1 |
Raw request/response logs are not archived yet — the outcome counts above are drawn directly from every recorded trial.
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[](https://vouch.tools/tools/3f567715-7529-4c68-87d5-08aaa0219048)