uniprot_get_proteome
shallowio.github.cyanheads/uniprot-mcp-server · Verify this server
Fetch the reference proteome for an organism by UPID (e.g. "UP000005640") or NCBI taxon ID (e.g. 9606) — provide exactly one. Returns metadata inline: proteome type, total protein count, BUSCO completeness (score, complete/fragmented/missing counts, lineage dataset), and the genome assembly accession. The protein set is opt-in via include_proteins (it is large — human is ~147,506) and returns a capped page with a forward cursor; narrow it with the query filter (UniProtKB Lucene syntax) for a subset. Resolve an organism name to a taxon ID first with uniprot_get_taxonomy.
1 trials · measured 51 days ago
uniprot_get_proteome scores 100.0/100 on Vouch's measured behaviour index, from 1 real invocation trials against io.github.cyanheads/uniprot-mcp-server, measured 31 Aug 2026 under methodology v0.2.0. Every measured component scored 100.
Component breakdown
| Component | Weight | Value |
|---|---|---|
| Reliability | 35% | not applicable |
| Schema integrity | 25% | 100.0 |
| Failure behaviour | 15% | not applicable |
| Latency | 15% | not applicable |
| Concurrency | 10% | not applicable |
Tool details
- Transport
- remote + stdio
- Credential class
- self-provisionable
- Input schema
- not declared
- Output schema
- not declared
- Side-effect classification
- unclassified
Score history
| Day | Score | Tier | Methodology |
|---|---|---|---|
| 2026-08-31 | 100.0 | shallow | v0.2.0 |
Probe evidence
| Probe | Outcomes |
|---|---|
| schema_integrity | pass: 1 |
Raw request/response logs are not archived yet — the outcome counts above are drawn directly from every recorded trial.
Embed this score
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[](https://vouch.tools/tools/371214ce-a6b0-482f-b771-907ba0772b72)