uniprot_map_ids

io.github.cyanheads/uniprot-mcp-server · Verify this server

Translate identifiers across databases via UniProt's ID-mapping service — gene names to accessions, accession to PDB / Ensembl / RefSeq / ChEMBL / GeneID, and back. The job runs asynchronously; this tool submits it and polls within a budget. If it finishes in time you get status "finished" with the mappings; if it runs long you get status "running" with a ticket — re-call with that ticket (and no other inputs) to fetch the result without re-submitting. A gene name often maps to one reviewed Swiss-Prot accession plus dozens of unreviewed TrEMBL ones, so target UniProtKB-Swiss-Prot (reviewed only) for the usual intent, or UniProtKB / UniProtKB_AC-ID to include TrEMBL. Pair a gene-symbol from_db with tax_id to disambiguate species. Chain the resulting accessions into uniprot_get_entry.