io.github.srikarjy/biolab-mcp-server

Tools

• add_evidence_to_collection

  Add or update a retrieval in a scientist-reviewed evidence collection.

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• create_claim

  Create a scientific claim record without asserting that it is true.

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• create_evidence_collection

  Create a reviewed evidence collection in a project.

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• create_evidence_watch

  Create a saved query for explicit evidence-change monitoring.

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• create_project

  Create a persistent scientist research project.

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• fetch

  Fetch one preserved evidence record by retrieval ID.

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• get_artifact

  Fetch an output artifact by its sha256 (text only; capped in size).

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• get_evidence_collection

  Return a collection and its reviewed evidence items.

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• get_execution

  Fetch one execution record, including output artifact hashes.

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• get_project_report

  Return collections, claims, evidence links, watches, and events for a project.

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• get_retrieval

  Retrieve a full retrieval record by its retrieval_id. Args: retrieval_id: the UUID returned by search_pubmed

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• link_claim_evidence

  Propose or record how one retrieval relates to a claim.

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• list_evidence_collections

  List evidence collections, optionally within one project.

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• list_evidence_events

  List change events previously detected by an evidence watch.

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• list_evidence_watches

  List saved evidence watches, optionally within one project.

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• list_execution_tools

  List runnable tools with their pinned versions, containers and devices.

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• list_executions

  List recent execution records, newest first.

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• list_projects

  List scientist research projects.

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• replay_execution

  Re-run a recorded execution and report whether its outputs reproduced. Writes nothing.

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• run_all_evidence_watches

  Run all active watches and return explicit per-watch failures.

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• run_evidence_watch

  Run one evidence watch and record added, removed, or revised evidence.

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• run_tool

  Run a registered tool and seal an ExecutionRecord (inputs, versions, output hashes). Args: tool: tool name from list_execution_tools inputs: tool inputs (JSON object); stored verbatim so the run can be replayed agent_id: calling agent or workflow identity retrieval_ids: evidence retrievals this run was derived from, for provenance links

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• search

  Search all evidence sources for ChatGPT/Codex knowledge compatibility.

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• search_biorxiv

  List bioRxiv/medRxiv preprints by category and log each to the audit trail. No free-text search exists on this API — only category listing (last 30 days). Args: category: category, e.g. "neuroscience", "bioinformatics", or "all" agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many preprints to retrieve (default 5) server: "biorxiv" or "medrxiv" (default "biorxiv")

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• search_clinicaltrials

  Search ClinicalTrials.gov and log every retrieved study to the audit trail. Args: query: condition/disease search string, sent to ClinicalTrials.gov verbatim agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many studies to retrieve (default 5)

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• search_europepmc

  Search Europe PMC and log every retrieved article to the audit trail. Args: query: exact search string, sent to Europe PMC verbatim — no normalization agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many articles to retrieve (default 5)

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• search_evidence

  Search several scientific sources in one explicitly audited workflow. Args: query: scientific evidence query sent to each selected source agent_id: calling agent or workflow identity sources: any of pubmed, europepmc, clinicaltrials, uniprot, opentargets max_results: maximum results to preserve per source (1-50)

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• search_pubmed

  Search PubMed and log every retrieved paper to the audit trail. Args: query: exact search string, sent to PubMed verbatim — no normalization agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many papers to retrieve (default 5)

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• trace_claim

  Trace a claim to supporting, conflicting, contextual, or insufficient evidence.

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• verify_executions

  Verify the execution hash chain and that every output artifact is intact.

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Embed this server’s score

Tool count and median score across every tool in this server’s corpus — honest in a way a single cherry-picked tool’s badge wouldn’t be.

[![Vouch score](https://vouch.tools/api/servers/24f67683-ab0e-46b1-8660-c629fa7bf12b/badge.svg)](https://vouch.tools/servers/24f67683-ab0e-46b1-8660-c629fa7bf12b)